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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
9
total RNA-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
19
DNA binding
12
Transcription
6
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
February, 2021
17
August, 2017
12
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
56
bam
44
fastq
39
bigWig
15
tsv
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
39
Homo sapiens
Biosample type
37
tissue
2
primary cell
Organ
622
liver
597
pancreas
275
epithelium
222
brain
168
heart
131
kidney
120
connective tissue
99
vasculature
94
blood vessel
91
limb
68
musculature of body
55
blood
55
bodily fluid
39
adipose tissue
nerve
29
artery
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
39
AMP
Genome assembly (visualization)
37
hg19
36
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
12
missing controlled_by
organ_slims!
nerve
month_released!
February, 2021
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
white adipose tissue
12
omental fat pad
3
4
1
1
2
subcutaneous adipose tissue
2
4
1
1
adipose tissue
1
2
2
subcutaneous abdominal adipose tissue
1
primary cell
mesenchymal stem cell of adipose
1
1
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