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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
73
DNA binding
8
DNA accessibility
6
DNA methylation
2
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
2
July, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
46
bam
43
fastq
29
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
90
Homo sapiens
Biosample type
91
tissue
1
in vitro differentiated cells
1
primary cell
Organ
298
heart
249
kidney
248
brain
216
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
29
hg19
27
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
spleen
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
1
subcutaneous adipose tissue
12
1
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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