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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
RNA microarray
55
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
WGBS
3
pCHi-C
Assay category
55
DNA binding
7
DNA accessibility
6
Transcription
4
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
11
narrow histone mark
Date released
84
February, 2021
41
August, 2017
18
October, 2018
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2021
1
October, 2019
Available data
88
txt
21
fastq
19
bam
8
tagAlign
4
bed bed3
3
bigWig
3
tsv
2
bed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
159
Homo sapiens
Biosample type
158
tissue
1
in vitro differentiated cells
1
primary cell
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
159
AMP
1
T1D
Genome assembly (visualization)
496
hg19
GRCh38
Lab
159
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
160 results
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RNA microarray
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
pCHi-C
tissue
bone element
84
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
1
10
1
omental fat pad
8
1
adipose tissue
1
3
1
1
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in vitro differentiated cells
white fat cell
1
primary cell
megakaryocyte
1
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