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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
RNA microarray
73
ChIP-seq
18
ATAC-seq
6
WGBS
5
total RNA-seq
2
DNase-seq
2
pCHi-C
Assay category
73
DNA binding
20
DNA accessibility
6
DNA methylation
5
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
92
February, 2021
57
August, 2017
23
October, 2018
9
February, 2023
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
508
bam
483
bigWig
tsv
88
txt
44
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
190
Homo sapiens
Biosample type
189
tissue
1
in vitro differentiated cells
1
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
190
AMP
1
T1D
Genome assembly (visualization)
40
hg19
34
GRCh38
Lab
190
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
191 results
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RNA microarray
ChIP-seq
ATAC-seq
WGBS
total RNA-seq
DNase-seq
pCHi-C
tissue
bone element
84
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
1
12
1
white adipose tissue
12
+ See 14 more…
in vitro differentiated cells
white fat cell
1
primary cell
megakaryocyte
1
See all biosamples
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