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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
460
total RNA-seq
85
RNA microarray
73
ChIP-seq
18
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
Assay category
463
Transcription
73
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
536
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
508
bam
483
bigWig
459
tsv
88
txt
44
fastq
21
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
bed bed3
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
649
Homo sapiens
Biosample type
646
tissue
3
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
649
AMP
1
T1D
Genome assembly (visualization)
496
hg19
490
GRCh38
Lab
649
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
lymph node
BIOSAMPLE
ASSAY
650 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
tissue
adipose tissue
382
2
3
3
1
bone element
84
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
12
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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