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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
17
ATAC-seq
9
total RNA-seq
2
Capture-C
1
pCHi-C
Assay category
62
DNA binding
17
DNA accessibility
9
Transcription
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
transcription factor
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
62
August, 2017
13
February, 2023
8
February, 2021
4
August, 2021
2
October, 2019
1
August, 2018
1
May, 2021
Available data
54
bam
52
bigWig
50
fastq
45
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
bigBed broadPeak
Organism
91
Homo sapiens
Biosample type
533
tissue
91
in vitro differentiated cells
33
primary cell
1
stem cell
Organ
91
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
91
AMP
Genome assembly (visualization)
67
hg19
48
GRCh38
Lab
87
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bigBed broadPeak
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
62
8
5
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
cardiac fibroblast
1
white fat cell
1
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