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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
4
total RNA-seq
3
WGBS
2
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
59
DNA binding
4
Transcription
3
DNA accessibility
3
DNA methylation
Target of assay
26
control
20
transcription factor
13
histone
13
histone modification
9
narrow histone mark
5
RNA binding protein
4
broad histone mark
Date released
23
October, 2018
18
August, 2017
13
December, 2017
13
February, 2018
1
August, 2018
1
January, 2018
1
November, 2018
1
October, 2017
Available data
478
bam
454
bigWig
415
tsv
71
fastq
27
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
8
tagAlign
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
71
Homo sapiens
Biosample type
43
tissue
28
in vitro differentiated cells
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
71
AMP
Genome assembly (visualization)
42
GRCh38
40
hg19
1
hg18
Lab
71
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
3
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
white fat cell
1
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