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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
475
total RNA-seq
70
single cell RNA-seq
6
WGBS
3
small RNA-seq
1
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
548
Transcription
6
DNA methylation
1
DNA accessibility
Date released
418
February, 2021
33
April, 2018
33
July, 2018
26
September, 2018
17
July, 2019
6
December, 2019
6
May, 2021
4
March, 2020
3
August, 2018
3
October, 2019
2
February, 2020
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
759
bam
726
bigWig
557
tsv
301
fastq
164
bed narrowPeak
86
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
25
bed broadPeak
24
bigBed broadPeak
15
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
6
bedpe bed3+
6
hic
3
cool
2
hdf5
1
tar
Organism
557
Homo sapiens
Biosample type
402
tissue
118
primary cell
35
cell line
2
in vitro differentiated cells
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
549
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
545
hg19
544
GRCh38
Lab
551
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
557 results
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total RNA-seq
single cell RNA-seq
WGBS
small RNA-seq
ATAC-seq
RNA microarray
pCHi-C
tissue
adipose tissue
381
1
subcutaneous adipose tissue
7
1
omental fat pad
5
1
visceral abdominal adipose tissue
3
pigmented layer of retina
2
+ See 1 more…
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 12 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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