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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
53
ATAC-seq
32
DNase-seq
14
WGBS
3
Hi-C
2
RRBS
1
RNA microarray
1
pCHi-C
1
single cell RNA-seq
1
total RNA-seq
Assay category
167
DNA binding
85
DNA accessibility
16
DNA methylation
3
3D chromatin structure
2
Transcription
Target of assay
94
histone
94
histone modification
57
broad histone mark
44
control
37
narrow histone mark
29
transcription factor
11
RNA binding protein
Date released
57
April, 2019
57
August, 2017
37
February, 2023
36
June, 2019
23
October, 2018
21
May, 2019
14
February, 2021
14
July, 2019
7
October, 2019
2
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
653
bam
609
bigWig
tsv
164
bed narrowPeak
104
bigBed narrowPeak
44
fastq
36
bed bed3+
33
bed broadPeak
32
bigBed broadPeak
14
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
bedpe bed3+
3
hic
Organism
274
Homo sapiens
Biosample type
251
tissue
14
cell line
9
primary cell
1
in vitro differentiated cells
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
275
AMP
Genome assembly (visualization)
182
GRCh38
146
hg19
Lab
275
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
275 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
RNA microarray
pCHi-C
single cell RNA-seq
total RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
subcutaneous abdominal adipose tissue
36
3
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
in vitro differentiated cells
white fat cell
1
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