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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
138
ChIP-seq
14
ATAC-seq
7
WGBS
4
Hi-C
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
405
Transcription
138
DNA binding
14
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
80
histone
80
histone modification
54
broad histone mark
41
control
26
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
66
October, 2019
56
August, 2017
23
October, 2018
14
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
553
bam
513
bigWig
405
tsv
105
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
570
Homo sapiens
Biosample type
569
tissue
1
in vitro differentiated cells
1
primary cell
Organ
923
pancreas
725
liver
671
connective tissue
502
epithelium
485
adipose tissue
362
heart
275
kidney
235
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
48
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
571
AMP
Genome assembly (visualization)
480
hg19
479
GRCh38
Lab
571
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed broadPeak
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
571 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
subcutaneous abdominal adipose tissue
35
3
tibial artery
1
23
1
subcutaneous adipose tissue
7
12
1
1
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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