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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
38
DNase-seq
19
total RNA-seq
8
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
139
DNA binding
46
DNA accessibility
22
Transcription
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
February, 2021
70
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
164
bam
130
bigWig
99
bed narrowPeak
94
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
22
tsv
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
220
Homo sapiens
Biosample type
218
tissue
2
primary cell
1
in vitro differentiated cells
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
287
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
221
AMP
Genome assembly (visualization)
130
hg19
128
GRCh38
Lab
221
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
tibial nerve
35
2
5
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
23
2
1
1
muscle of leg
7
13
1
omental fat pad
11
2
5
1
1
+ See 9 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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