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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
139
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
139
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
54
broad histone mark
41
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
70
October, 2019
57
August, 2017
33
June, 2019
23
October, 2018
15
July, 2019
7
May, 2019
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
554
bam
514
bigWig
401
tsv
105
bed narrowPeak
94
bigBed narrowPeak
43
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
Organism
604
Homo sapiens
Biosample type
605
tissue
2
primary cell
1
in vitro differentiated cells
Organ
545
connective tissue
504
pancreas
486
adipose tissue
360
liver
310
heart
299
kidney
253
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
80
musculature of body
71
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
605
AMP
Genome assembly (visualization)
520
hg19
518
GRCh38
Lab
605
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2020
BIOSAMPLE
ASSAY
605 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
tibial nerve
4
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
23
2
1
muscle of leg
7
13
1
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