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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
18
total RNA-seq
8
ATAC-seq
6
DNase-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
132
DNA binding
21
Transcription
14
DNA accessibility
6
DNA methylation
Target of assay
75
histone
75
histone modification
50
broad histone mark
40
control
25
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
February, 2021
70
October, 2019
57
August, 2017
23
October, 2018
12
July, 2019
4
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
124
bam
91
bigWig
61
bed narrowPeak
56
bigBed narrowPeak
44
fastq
21
tsv
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
175
Homo sapiens
Biosample type
173
tissue
2
primary cell
1
in vitro differentiated cells
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
176
AMP
Genome assembly (visualization)
92
hg19
90
GRCh38
Lab
176
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2021
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
tibial nerve
35
5
1
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
23
1
1
2
omental fat pad
11
5
1
2
1
subcutaneous adipose tissue
12
5
1
1
1
+ See 4 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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