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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
total RNA-seq
65
ChIP-seq
11
ATAC-seq
5
DNase-seq
3
WGBS
3
small RNA-seq
Assay category
403
Transcription
65
DNA binding
16
DNA accessibility
3
DNA methylation
Target of assay
48
histone
48
histone modification
34
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
392
February, 2021
52
October, 2019
June, 2019
16
August, 2017
13
July, 2019
5
May, 2019
5
October, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
486
bam
479
bigWig
402
tsv
69
bed narrowPeak
59
bigBed narrowPeak
23
fastq
9
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
487
Homo sapiens
Biosample type
485
tissue
2
primary cell
Organ
631
pancreas
551
connective tissue
529
liver
423
adipose tissue
276
epithelium
233
heart
187
brain
184
vasculature
182
blood vessel
126
artery
125
kidney
66
bone element
64
limb
54
blood
54
bodily fluid
31
nerve
29
embryo
16
spleen
12
musculature of body
12
vein
8
skeleton
1
pericardium
1
pituitary gland
Project
487
AMP
Genome assembly (visualization)
489
hg19
487
GRCh38
Lab
487
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
487 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
tibial nerve
4
24
1
2
tibial artery
18
1
2
white adipose tissue
12
omental fat pad
4
3
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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