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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
85
ChIP-seq
38
DNase-seq
14
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
408
Transcription
85
DNA binding
52
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
81
histone
81
histone modification
broad histone mark
41
control
27
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
392
February, 2021
40
October, 2019
37
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
5
February, 2020
3
May, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
522
bam
482
bigWig
408
tsv
71
bed narrowPeak
60
bigBed narrowPeak
44
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
4
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
558
Homo sapiens
Biosample type
556
tissue
2
primary cell
1
in vitro differentiated cells
Organ
868
pancreas
749
liver
640
connective tissue
epithelium
471
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
559
AMP
Genome assembly (visualization)
488
hg19
486
GRCh38
Lab
559
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
559 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
19
2
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
1
subcutaneous abdominal adipose tissue
16
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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