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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
89
ChIP-seq
38
DNase-seq
13
ATAC-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
1
RNA microarray
1
WGBS
Assay category
408
Transcription
89
DNA binding
51
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
35
control
34
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
392
February, 2021
70
October, 2019
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
539
bam
499
bigWig
408
tsv
102
bed narrowPeak
92
bigBed narrowPeak
38
bed bed3+
38
bed broadPeak
38
bigBed broadPeak
26
fastq
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
556
Homo sapiens
Biosample type
553
tissue
3
primary cell
1
in vitro differentiated cells
Organ
758
pancreas
737
liver
559
connective tissue
495
epithelium
434
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
556
AMP
1
T1D
Genome assembly (visualization)
507
hg19
504
GRCh38
Lab
556
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
557 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RNA microarray
WGBS
tissue
adipose tissue
382
3
1
tibial nerve
5
35
2
1
tibial artery
1
23
2
1
muscle of leg
7
13
1
subcutaneous adipose tissue
7
12
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
in vitro differentiated cells
white fat cell
1
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