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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
33
total RNA-seq
23
ATAC-seq
8
WGBS
5
pCHi-C
4
Hi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
RNA microarray
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
78
DNA binding
34
Transcription
24
DNA accessibility
10
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
54
histone
54
histone modification
33
broad histone mark
21
narrow histone mark
12
control
12
transcription factor
1
RNA binding protein
Date released
68
August, 2017
40
May, 2022
32
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
1
August, 2018
1
December, 2018
1
February, 2023
1
January, 2018
1
May, 2020
1
May, 2023
1
November, 2017
1
October, 2019
Available data
bam
1047
bigWig
575
tsv
509
fastq
454
bed narrowPeak
368
bigBed narrowPeak
94
tagAlign
66
bed broadPeak
65
bigBed broadPeak
19
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
bedpe bed3+
3
tar
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
158
Homo sapiens
Biosample type
121
tissue
35
cell line
2
primary cell
1
in vitro differentiated cells
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
159
AMP
Genome assembly (visualization)
45
hg19
1
GRCh38
Lab
88
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
files.file_type!
bam
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
STARR-seq
DNase-seq
RNA microarray
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
3
1
1
1
1
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
1
right lobe of liver
1
1
1
subcutaneous adipose tissue
1
1
+ See 1 more…
cell line
HepG2
19
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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