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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
total RNA-seq
6
small RNA-seq
3
pCHi-C
Assay category
572
Transcription
Date released
386
February, 2021
144
May, 2020
19
July, 2019
9
August, 2021
5
December, 2019
5
January, 2019
3
February, 2020
3
March, 2020
1
October, 2019
Available data
1123
bam
1047
bigWig
575
tsv
509
fastq
454
bed narrowPeak
368
bigBed narrowPeak
94
tagAlign
66
bed broadPeak
65
bigBed broadPeak
19
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
bedpe bed3+
3
tar
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
575
Homo sapiens
Biosample type
553
tissue
15
cell line
7
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
575
AMP
Genome assembly (visualization)
560
GRCh38
560
hg19
Lab
566
AMP-T2D consortium
9
Bing Ren, UCSD
BIOSAMPLE
ASSAY
575 results
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total RNA-seq
small RNA-seq
pCHi-C
tissue
adipose tissue
381
1
liver
147
1
1
subcutaneous adipose tissue
7
1
omental fat pad
5
1
right lobe of liver
3
2
+ See 1 more…
cell line
HepG2
14
1
primary cell
hepatocyte
5
mesenchymal stem cell of adipose
1
1
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