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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
6
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
410
Transcription
DNA binding
18
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
19
April, 2020
12
July, 2019
7
August, 2017
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
406
bigWig
405
bam
402
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
436
Homo sapiens
Biosample type
435
tissue
2
primary cell
1
in vitro differentiated cells
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
419
AMP
19
LungMap
Genome assembly (visualization)
407
hg19
406
GRCh38
Lab
419
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
438 results
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total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
3
3
1
lung
10
9
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
subcutaneous abdominal adipose tissue
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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