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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
4
WGBS
3
ATAC-seq
3
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
55
DNA binding
13
DNA accessibility
11
Transcription
4
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
11
narrow histone mark
Date released
41
August, 2017
19
April, 2020
18
October, 2018
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
October, 2019
Available data
21
fastq
19
bam
8
tagAlign
4
tsv
3
bigWig
2
bed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
85
Homo sapiens
Biosample type
86
tissue
1
in vitro differentiated cells
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
19
LungMap
Genome assembly (visualization)
426
hg19
GRCh38
Lab
68
AMP-T2D consortium
19
Xin Sun, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
lung
10
9
1
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
3
1
in vitro differentiated cells
white fat cell
1
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