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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
6
Hi-C
5
RRBS
4
ATAC-seq
4
WGBS
4
total RNA-seq
3
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
81
DNA binding
9
DNA methylation
6
3D chromatin structure
5
DNA accessibility
5
Transcription
Target of assay
51
histone
51
histone modification
32
broad histone mark
30
control
19
narrow histone mark
Date released
67
August, 2017
18
October, 2018
5
July, 2019
4
February, 2020
4
March, 2020
2
January, 2018
2
June, 2019
2
May, 2019
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
October, 2019
Available data
23
bam
23
fastq
23
tagAlign
18
bigWig
16
bed narrowPeak
14
bed broadPeak
6
tsv
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
2
bigBed narrowPeak
2
hic
1
bed bed3+
1
txt
Organism
109
Homo sapiens
Biosample type
106
tissue
3
primary cell
1
in vitro differentiated cells
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
499
hg19
GRCh38
Lab
110
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
total RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
1
1
1
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
1
+ See 4 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
in vitro differentiated cells
white fat cell
1
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