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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
47
ChIP-seq
35
DNase-seq
7
ATAC-seq
7
WGBS
6
Hi-C
5
RRBS
5
small RNA-seq
3
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
47
DNA binding
43
DNA accessibility
12
DNA methylation
6
3D chromatin structure
Target of assay
65
histone
histone modification
40
broad histone mark
30
control
25
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
36
June, 2019
32
August, 2017
23
October, 2018
22
July, 2019
6
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
484
bam
464
bigWig
410
tsv
45
fastq
44
bed narrowPeak
42
bigBed narrowPeak
40
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
tagAlign
2
hic
1
txt
Organism
521
Homo sapiens
Biosample type
513
tissue
8
primary cell
1
in vitro differentiated cells
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
522
AMP
Genome assembly (visualization)
470
hg19
463
GRCh38
Lab
522
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
522 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
1
muscle of arm
17
muscle of leg
1
13
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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