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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
67
ChIP-seq
6
WGBS
4
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
1
RRBS
Assay category
402
Transcription
67
DNA binding
7
DNA methylation
4
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
14
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
443
bam
426
bigWig
402
tsv
44
fastq
13
bed narrowPeak
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
482
Homo sapiens
Biosample type
479
tissue
3
primary cell
1
in vitro differentiated cells
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
259
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
483
AMP
Genome assembly (visualization)
418
hg19
416
GRCh38
Lab
483
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
RRBS
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
white adipose tissue
12
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
in vitro differentiated cells
white fat cell
1
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