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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
93
ChIP-seq
8
WGBS
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
93
DNA binding
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
32
control
24
broad histone mark
23
transcription factor
14
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
8
November, 2018
7
December, 2018
7
January, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
May, 2023
Available data
459
bam
433
bigWig
402
tsv
63
fastq
19
bed narrowPeak
18
bigBed narrowPeak
8
tagAlign
4
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
505
Homo sapiens
Biosample type
503
tissue
2
primary cell
1
in vitro differentiated cells
Organ
773
pancreas
762
liver
650
connective tissue
483
adipose tissue
401
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
506
AMP
Genome assembly (visualization)
433
GRCh38
430
hg19
Lab
506
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
506 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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