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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
93
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
3
pCHi-C
1
RNA microarray
Assay category
389
Transcription
93
DNA binding
10
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
32
control
24
broad histone mark
23
transcription factor
14
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
57
August, 2017
23
October, 2018
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
2
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
454
bam
429
bigWig
390
tsv
68
fastq
27
bed narrowPeak
23
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
Organism
503
Homo sapiens
Biosample type
503
tissue
1
in vitro differentiated cells
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
504
AMP
Genome assembly (visualization)
428
GRCh38
428
hg19
Lab
504
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
July, 2019
BIOSAMPLE
ASSAY
504 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
1
subcutaneous adipose tissue
3
12
1
1
omental fat pad
1
11
1
2
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in vitro differentiated cells
white fat cell
1
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