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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
110
ChIP-seq
8
WGBS
7
ATAC-seq
5
DNase-seq
3
pCHi-C
3
small RNA-seq
2
Hi-C
1
FAIRE-seq
1
RNA microarray
Assay category
401
Transcription
110
DNA binding
13
DNA accessibility
8
DNA methylation
2
3D chromatin structure
Target of assay
53
histone
53
histone modification
34
control
33
broad histone mark
23
transcription factor
20
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
57
August, 2017
23
October, 2018
22
October, 2019
12
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
3
March, 2020
2
February, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
Available data
486
bam
456
bigWig
402
tsv
68
fastq
40
bed narrowPeak
36
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
tar
Organism
537
Homo sapiens
Biosample type
513
tissue
24
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
538
AMP
Genome assembly (visualization)
457
hg19
452
GRCh38
Lab
538
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
538 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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