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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
55
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
55
DNA binding
10
DNA accessibility
8
DNA methylation
Target of assay
38
histone
histone modification
32
control
24
broad histone mark
23
transcription factor
14
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
10
November, 2018
7
December, 2018
2
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
January, 2019
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
459
bam
433
bigWig
402
tsv
61
fastq
19
bed narrowPeak
16
bigBed narrowPeak
7
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
3
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
477
Homo sapiens
Biosample type
475
tissue
2
primary cell
1
in vitro differentiated cells
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
433
GRCh38
432
hg19
Lab
478
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
spleen
14
2
1
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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