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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
90
ChIP-seq
6
ATAC-seq
6
WGBS
3
DNase-seq
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
401
Transcription
90
DNA binding
10
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
47
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
22
October, 2019
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
Available data
461
bam
439
bigWig
401
tsv
43
fastq
25
bed narrowPeak
22
bigBed narrowPeak
8
tagAlign
7
bed bed3+
6
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tar
Organism
511
Homo sapiens
Biosample type
487
tissue
24
primary cell
1
in vitro differentiated cells
Organ
939
pancreas
738
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
284
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
512
AMP
Genome assembly (visualization)
442
hg19
435
GRCh38
Lab
512
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
November, 2018
BIOSAMPLE
ASSAY
512 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
white adipose tissue
12
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primary cell
endothelial cell of umbilical vein
17
2
2
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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