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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
53
DNA binding
8
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
37
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
4
tagAlign
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
69
Homo sapiens
Biosample type
69
tissue
1
in vitro differentiated cells
Organ
575
liver
451
pancreas
324
epithelium
315
kidney
190
brain
162
connective tissue
148
heart
123
vasculature
117
blood vessel
101
bone element
81
limb
70
adipose tissue
69
artery
69
blood
69
bodily fluid
67
musculature of body
56
eye
22
nerve
20
spleen
19
embryo
19
lung
18
ureter
16
skeleton
13
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
70
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
broad histone mark
files.file_type!
tsv
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
16
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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in vitro differentiated cells
white fat cell
1
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