Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
53
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
401
Transcription
53
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
37
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
424
bigWig
401
tsv
43
fastq
12
bed narrowPeak
9
bigBed narrowPeak
5
bed bed3+
4
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
469
Homo sapiens
Biosample type
467
tissue
2
primary cell
1
in vitro differentiated cells
Organ
861
pancreas
696
liver
639
connective tissue
480
epithelium
470
adipose tissue
339
kidney
316
heart
214
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
61
eye
54
blood
54
bodily fluid
33
embryo
27
nerve
20
lung
18
ureter
16
skeleton
13
vein
12
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
470
AMP
Genome assembly (visualization)
425
hg19
423
GRCh38
Lab
470
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
broad histone mark
month_released!
November, 2018
BIOSAMPLE
ASSAY
470 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
subcutaneous abdominal adipose tissue
16
3
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download