Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
49
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
49
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
50
August, 2017
12
July, 2019
5
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
419
bigWig
418
bam
401
tsv
22
fastq
7
bed narrowPeak
7
tagAlign
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
458
Homo sapiens
Biosample type
456
tissue
2
primary cell
1
in vitro differentiated cells
Organ
720
pancreas
654
liver
615
connective tissue
459
adipose tissue
371
epithelium
256
heart
218
brain
179
kidney
156
vasculature
153
blood vessel
147
bone element
83
artery
61
limb
55
musculature of body
54
blood
54
bodily fluid
30
embryo
29
nerve
28
eye
17
vein
15
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
459
AMP
Genome assembly (visualization)
419
GRCh38
418
hg19
Lab
459
AMP-T2D consortium
Audit category:
12
missing controlled_by
target.investigated_as!
control
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
459 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous abdominal adipose tissue
31
3
white adipose tissue
12
subcutaneous adipose tissue
7
2
1
1
omental fat pad
5
3
1
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download