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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
41
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
41
DNA binding
8
DNA accessibility
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
23
October, 2018
19
August, 2017
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
439
bam
421
bigWig
401
tsv
40
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
452
Homo sapiens
Biosample type
450
tissue
2
primary cell
1
in vitro differentiated cells
Organ
742
pancreas
682
liver
599
connective tissue
453
adipose tissue
378
epithelium
320
kidney
281
heart
162
vasculature
159
bone element
158
blood vessel
121
artery
97
brain
72
limb
68
blood
68
bodily fluid
57
eye
57
musculature of body
25
embryo
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
453
AMP
Genome assembly (visualization)
424
hg19
421
GRCh38
Lab
453
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
453 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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