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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
17
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
399
Transcription
17
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
1
histone
histone modification
1
narrow histone mark
Date released
386
February, 2021
15
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
422
bam
421
bigWig
398
tsv
22
fastq
10
bed narrowPeak
8
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
423
Homo sapiens
Biosample type
421
tissue
2
primary cell
Organ
532
connective tissue
499
pancreas
461
liver
423
adipose tissue
206
epithelium
175
kidney
165
heart
125
vasculature
122
blood vessel
108
artery
66
bone element
53
blood
53
bodily fluid
49
brain
49
limb
40
musculature of body
18
embryo
18
ureter
10
spleen
8
skeleton
7
nerve
5
eye
2
vein
1
pericardium
Project
423
AMP
Genome assembly (visualization)
424
hg19
423
GRCh38
Lab
423
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
423 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
382
2
white adipose tissue
12
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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