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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
6
Hi-C
5
total RNA-seq
4
RRBS
2
pCHi-C
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Date released
32
June, 2019
7
July, 2019
6
March, 2020
4
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
Available data
38
bigWig
37
bam
33
bed bed3+
32
bed broadPeak
32
bed narrowPeak
32
bigBed broadPeak
32
bigBed narrowPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
54
Homo sapiens
Biosample type
54
tissue
4
primary cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
42
hg19
37
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
54 results
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DNase-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
ATAC-seq
WGBS
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
adrenal gland
1
forelimb muscle
1
hindlimb muscle
1
left ventricle myocardium
1
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