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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
69
total RNA-seq
66
ChIP-seq
36
DNase-seq
14
ATAC-seq
4
Hi-C
2
pCHi-C
1
WGBS
Assay category
69
Transcription
66
DNA binding
50
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
150
February, 2021
69
October, 2019
32
June, 2019
8
February, 2023
7
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2021
Available data
174
bam
149
bigWig
94
bed narrowPeak
88
txt
84
bigBed narrowPeak
66
tsv
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
276
Homo sapiens
Biosample type
275
tissue
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
275
AMP
1
T1D
Genome assembly (visualization)
160
hg19
156
GRCh38
Lab
275
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
BIOSAMPLE
ASSAY
276 results
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RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
WGBS
tissue
bone element
84
bone tissue
58
tibial nerve
5
35
2
1
tibial artery
1
23
2
1
muscle of leg
7
13
1
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primary cell
megakaryocyte
1
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