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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
5
DNase-seq
4
total RNA-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
22
DNA binding
6
DNA accessibility
4
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
21
October, 2019
8
June, 2019
5
July, 2019
1
March, 2020
Available data
32
bam
25
bigWig
19
bed narrowPeak
19
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
5
bed bed3+
4
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
35
Homo sapiens
Biosample type
314
tissue
66
cell line
35
primary cell
1
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
0
adrenal gland
Project
35
AMP
Genome assembly (visualization)
27
hg19
22
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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