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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
47
ATAC-seq
8
WGBS
4
pCHi-C
3
Hi-C
2
RRBS
Assay category
Transcription
129
DNA binding
47
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
June, 2019
21
May, 2019
14
February, 2021
14
July, 2019
6
March, 2020
6
October, 2019
Available data
158
bed narrowPeak
121
bigWig
106
bam
61
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
4
tsv
3
bedpe bed3+
3
hic
Organism
193
Homo sapiens
Biosample type
178
tissue
14
cell line
1
primary cell
Organ
596
liver
463
pancreas
303
epithelium
232
brain
192
heart
185
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
23
embryo
22
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
193
AMP
Genome assembly (visualization)
163
GRCh38
88
hg19
Lab
153
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
month_released!
June, 2019
assay_slims!
Transcription
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
tissue
heart left ventricle
35
2
4
1
1
1
coronary artery
5
36
left cardiac atrium
40
heart right ventricle
13
2
1
1
heart
14
1
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
1
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