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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
34
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
3
pCHi-C
2
ATAC-seq
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
44
DNA binding
37
DNA accessibility
9
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
26
histone
26
histone modification
16
broad histone mark
12
control
10
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
11
August, 2017
10
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
March, 2020
7
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
84
bigWig
81
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
26
fastq
tagAlign
11
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
107
Homo sapiens
Biosample type
93
tissue
14
primary cell
Organ
927
pancreas
705
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
74
hg19
69
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
spleen
20
1
2
1
1
muscle of leg
7
13
1
muscle of arm
17
skeletal muscle tissue
7
1
4
1
1
1
1
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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