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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
34
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
3
WGBS
3
pCHi-C
2
ATAC-seq
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
52
DNA binding
37
DNA accessibility
9
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
control
13
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
26
August, 2017
10
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
March, 2020
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
78
bigWig
74
bam
68
bed narrowPeak
54
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
26
fastq
15
tagAlign
11
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
115
Homo sapiens
Biosample type
101
tissue
14
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
81
hg19
64
GRCh38
Lab
115
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
May, 2019
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
spleen
20
1
2
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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