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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
64
DNase-seq
23
total RNA-seq
8
Hi-C
7
RRBS
6
small RNA-seq
5
ATAC-seq
4
pCHi-C
4
single cell RNA-seq
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
254
DNA binding
71
DNA accessibility
33
Transcription
8
3D chromatin structure
8
DNA methylation
Target of assay
219
histone
219
histone modification
129
narrow histone mark
90
broad histone mark
36
control
2
RNA binding protein
2
transcription factor
Date released
88
November, 2017
86
October, 2019
72
June, 2019
35
May, 2019
27
July, 2019
26
August, 2017
16
October, 2017
14
February, 2020
8
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
296
bam
285
bigWig
260
bed narrowPeak
171
bigBed narrowPeak
133
tagAlign
90
bed broadPeak
68
bigBed broadPeak
67
bed bed3+
36
tsv
20
fastq
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hdf5
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
378
Homo sapiens
Biosample type
348
tissue
30
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
378
AMP
Genome assembly (visualization)
267
GRCh38
232
hg19
Lab
378
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
378 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
WGBS
snATAC-seq
tissue
brain
20
14
1
1
1
skeletal muscle tissue
22
1
4
1
1
1
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
+ See 86 more…
primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
brain pericyte
1
1
+ See 3 more…
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