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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
32
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
2
total RNA-seq
1
pCHi-C
Assay category
41
DNA accessibility
32
DNA binding
4
Transcription
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
30
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
1
March, 2020
Available data
62
bed narrowPeak
34
bam
27
bigWig
25
bigBed narrowPeak
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
78
Homo sapiens
Biosample type
78
tissue
66
cell line
2
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
62
GRCh38
27
hg19
Lab
78
AMP-T2D consortium
organ_slims!
spleen
BIOSAMPLE
ASSAY
78 results
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ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
pCHi-C
tissue
coronary artery
36
5
2
1
tibial artery
1
23
2
1
islet of Langerhans
4
pulmonary artery
2
ovary
1
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