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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
34
ChIP-seq
2
single cell RNA-seq
Assay category
56
Transcription
45
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
February, 2020
Available data
102
bam
85
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
6
tagAlign
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
135
Homo sapiens
Biosample type
67
tissue
66
cell line
2
primary cell
Organ
916
pancreas
777
liver
655
connective tissue
503
epithelium
483
adipose tissue
320
heart
276
kidney
239
brain
220
vasculature
216
blood vessel
159
bone element
135
artery
83
limb
69
blood
69
bodily fluid
60
musculature of body
56
eye
40
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
135
AMP-T2D consortium
files.file_type!
bed bed3+
month_released!
February, 2020
BIOSAMPLE
ASSAY
135 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
36
5
tibial artery
1
23
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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