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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
29
ChIP-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
29
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
24
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
97
bam
80
bigWig
69
bed narrowPeak
58
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
bigBed broadPeak
2
tagAlign
Organism
132
Homo sapiens
Biosample type
68
tissue
62
cell line
2
primary cell
Organ
920
pancreas
635
connective tissue
495
epithelium
472
adipose tissue
434
liver
311
heart
266
kidney
248
brain
212
vasculature
210
blood vessel
159
bone element
132
artery
86
limb
63
musculature of body
56
eye
41
nerve
34
embryo
20
lung
18
blood
18
bodily fluid
18
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
119
GRCh38
84
hg19
Lab
132
AMP-T2D consortium
files.file_type!
bigBed broadPeak
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
tissue
coronary artery
1
36
4
tibial artery
1
1
23
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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