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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
28
ChIP-seq
10
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
28
DNA binding
14
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
58
tsv
39
bed narrowPeak
25
bigBed narrowPeak
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
100
Homo sapiens
Biosample type
60
cell line
38
tissue
2
primary cell
Organ
871
pancreas
705
liver
648
connective tissue
482
adipose tissue
465
epithelium
354
kidney
311
heart
195
vasculature
189
blood vessel
167
brain
151
bone element
122
limb
100
artery
81
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
89
GRCh38
89
hg19
Lab
100
AMP-T2D consortium
files.file_type!
tagAlign
month_released!
February, 2023
BIOSAMPLE
ASSAY
100 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
tissue
tibial artery
1
23
1
2
coronary artery
1
5
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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