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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
68
ATAC-seq
9
DNase-seq
Assay category
438
DNA binding
77
DNA accessibility
Target of assay
334
transcription factor
101
histone modification
100
histone
81
recombinant protein
57
RNA binding protein
57
narrow histone mark
43
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
35
February, 2023
27
May, 2020
27
October, 2019
20
May, 2022
18
August, 2017
17
August, 2021
13
February, 2021
4
June, 2019
3
May, 2019
1
July, 2019
Available data
783
bam
707
bigWig
515
bed narrowPeak
465
fastq
383
bigBed narrowPeak
232
tsv
92
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
515
Homo sapiens
Biosample type
320
cell line
175
tissue
14
in vitro differentiated cells
6
primary cell
Organ
441
liver
214
pancreas
203
brain
183
kidney
151
epithelium
151
heart
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
515
AMP
Genome assembly (visualization)
476
hg19
441
GRCh38
Lab
481
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
515 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
smooth muscle cell of the coronary artery
4
8
tissue
liver
82
20
2
coronary artery
3
36
2
tibial artery
18
1
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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