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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
48
ATAC-seq
9
DNase-seq
Assay category
384
DNA binding
57
DNA accessibility
Target of assay
291
transcription factor
90
histone modification
89
histone
81
recombinant protein
52
RNA binding protein
47
narrow histone mark
42
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
217
November, 2017
51
November, 2018
50
December, 2017
35
February, 2023
27
October, 2019
19
May, 2020
18
August, 2017
13
February, 2021
4
June, 2019
3
August, 2021
3
May, 2019
1
July, 2019
Available data
624
bam
613
bigWig
441
bed narrowPeak
351
bigBed narrowPeak
343
fastq
216
tsv
53
bed broadPeak
53
bigBed broadPeak
35
tagAlign
15
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
441
Homo sapiens
Biosample type
274
cell line
147
tissue
14
in vitro differentiated cells
6
primary cell
Organ
367
liver
201
brain
190
heart
188
pancreas
182
kidney
138
epithelium
132
vasculature
128
blood vessel
91
limb
74
artery
71
connective tissue
54
blood
54
bodily fluid
46
musculature of body
27
nerve
18
ureter
14
embryo
14
spleen
12
vein
11
adipose tissue
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
441
AMP
Genome assembly (visualization)
476
hg19
441
GRCh38
Lab
441
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
BIOSAMPLE
ASSAY
441 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
261
1
smooth muscle cell of the coronary artery
4
8
tissue
liver
74
2
coronary artery
3
36
2
tibial artery
18
1
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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