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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
54
ChIP-seq
46
ATAC-seq
5
DNase-seq
2
WGBS
1
pCHi-C
Assay category
56
Transcription
54
DNA binding
51
DNA accessibility
2
DNA methylation
Target of assay
26
histone
26
histone modification
18
broad histone mark
17
control
11
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
3
July, 2019
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
1
October, 2017
Available data
126
bam
101
bigWig
88
bed narrowPeak
57
tsv
38
bigBed narrowPeak
24
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
164
Homo sapiens
Biosample type
96
tissue
66
cell line
2
primary cell
Organ
942
pancreas
756
liver
679
connective tissue
518
epithelium
490
adipose tissue
286
brain
261
heart
230
vasculature
224
blood vessel
224
kidney
159
bone element
139
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
Genome assembly (visualization)
144
GRCh38
107
hg19
Lab
164
AMP-T2D consortium
month_released!
August, 2021
BIOSAMPLE
ASSAY
164 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
tissue
coronary artery
1
5
36
2
tibial artery
1
23
1
2
spleen
20
1
1
2
1
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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