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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
34
ChIP-seq
10
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
34
DNA binding
14
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
56
tsv
39
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
104
Homo sapiens
Biosample type
66
cell line
36
tissue
2
primary cell
Organ
889
pancreas
790
liver
668
connective tissue
488
adipose tissue
472
epithelium
354
kidney
314
heart
273
brain
198
vasculature
192
blood vessel
151
bone element
119
limb
104
artery
94
musculature of body
69
blood
69
bodily fluid
42
nerve
37
embryo
29
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
104
AMP-T2D consortium
month_released!
February, 2020
February, 2023
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
tibial artery
23
1
2
coronary artery
5
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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