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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
34
ChIP-seq
10
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
34
DNA binding
14
DNA accessibility
2
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
February, 2023
26
October, 2019
14
February, 2021
5
May, 2019
2
August, 2021
2
June, 2019
1
July, 2019
Available data
48
bam
39
bed narrowPeak
31
bigWig
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tsv
Organism
50
Homo sapiens
Biosample type
36
tissue
14
cell line
Organ
602
liver
529
pancreas
380
epithelium
294
kidney
268
brain
245
heart
200
connective tissue
140
vasculature
134
blood vessel
115
limb
93
bone element
92
adipose tissue
90
musculature of body
69
blood
69
bodily fluid
50
artery
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
15
eye
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
Lab
50
AMP-T2D consortium
month_released!
February, 2023
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
tissue
tibial artery
23
1
2
coronary artery
5
1
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
6
8
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