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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
25
ChIP-seq
10
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
25
DNA binding
14
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
February, 2023
21
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
93
bam
85
bigWig
58
tsv
39
bed narrowPeak
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
97
Homo sapiens
Biosample type
64
cell line
31
tissue
2
primary cell
Organ
837
pancreas
683
liver
635
connective tissue
466
adipose tissue
442
epithelium
342
kidney
297
heart
254
brain
179
vasculature
174
blood vessel
151
bone element
105
limb
97
artery
90
musculature of body
63
blood
63
bodily fluid
32
nerve
30
embryo
29
eye
20
lung
20
vein
18
ureter
17
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
97
AMP-T2D consortium
month_released!
February, 2023
target.investigated_as!
control
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
4
8
tissue
tibial artery
1
18
1
2
coronary artery
1
3
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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